Software

All our software is available through the lab bitbucket page: https://bitbucket.org/regulatorygenomicsupf/

Software, databases and web services provided by the group:

  • ProfileSeq: a computational method for the quantitative assessment of biological profiles (source code)
  • YISD: A database with information on RNA secondary structure of introns in S. cerevisiae and other Saccharomyces species (web) (Plass et al. 2012)
  • BioMart server: A database of processed high-throughput epigenomics data from the ENCODE project for the development of predictive models of gene regulation. (Biomart server) (Althammer et al. 2012)